Selected Publications

Frederick, M.A., Williamson, K., Garcia, M.F., Ferretti, M.B., McCarthy, R.L., Donahue, G., Montero, E.L., Takenaka, N., Reynaga, J., Kadoch, C., Zaret, K.S. (2022) Pioneer factor locally opens compacted chromatin to enable targeted ATP-dependent nucleosome remodeling. Nature Struc. Mol. Biol. (In Press)

McCarthy, R.L., Kaeding, K.E., Keller, S.H., Zhong, Y., Xu, L., Hsieh, A., Hou, Y., Donahue, G., Becker, J.S., Alberto, O., Lim, B., Zaret, K.S. (2021) Diverse heterochromatin-associated proteins repress distinct classes of genes and repetitive elements. Nature Cell Biol. 23, 905-914, doi: 10.1038/s41556-021-00725-7

Lerner, J., Gomez-Garcia, P.A., McCarthy, R.L., Liu, Z., Lakadamyali, M., Zaret, K.S. (2020) Two-parameter mobility assessments discriminate diverse regulatory factor behaviors in chromatin. Mol. Cell. 79(4), 677-688, doi: 10.1016/j.molcel.2020.05.036

Becker, J.S., McCarthy, R.L., Sidoli, S., Donahue, G., Kaeding, K.E., He, Z., Lin, S., Garcia, B.A., Zaret, K.S. (2017) Genomic and proteomic resolution of heterochromatin and its restriction of alternate fate genes. Mol. Cell. 68, 1023-1037, doi: 10.1016/j.molcel.2017.11.030

McCarthy, R.L., Mak, D.H., Burks, J.K., Barton, M.C. (2017) Rapid monoisotopic cisplatin based barcoding for multiplexed mass cytometry. Sci. Rep. 7(1), 3779, doi: 10.1038/s41598-017-03610-2

McCarthy, R.L., Duncan, A.D., Barton, M.C. (2017) Sample preparation for mass cytometry analysis. J. Vis. Exp. (122), e54394, doi: 10.3791/54394

Tovy, A., Spiro, Z., McCarthy, R.L., Shipony, Z., Aylon, Y., Alton, K., Ainbinder, E., Furth, N., Tanay, A., Barton, M.C., Oren, M. (2017) p53 is essential for DNA methylation homeostasis in naïve embryonic stem cells, and its loss promotes clonal heterogeneity. Genes & Dev. 31, 959-972, doi: 10.1101/gad.299198.117

Wang, L., Koutelou, E., Hirsch, C., McCarthy, R.L., Schibler, A., Lin, K., Lu, Y., Jeter, C., Shen, J., Barton, M.C., Dent, S.Y.R. (2017) GCN5 regulates FGF signaling and activates selective MYC target genes during early embryoid body differentiation. Stem Cell Reports. 10(1), 287-299, doi: 10.1016/j.stemcr.2017.11.009

Jain, A.K., Xi, Y., McCarthy, R.L., Allton, K., Akdemir, K.C., Patel, L.R., Aronow, B., Lin, C., Li, W., Yang, L., Barton, M.C. (2016) LncPRESS1 is a p53-regulated lncRNA that safeguards pluripotency by disrupting SIRT6-mediated de-acetylation of histone H3K56. Mol. Cell. 64(5), 967-981, doi: 10.1016/j.molcel.2016.10.039

Jung, K.-H., McCarthy, R.L., Zhou, C., Cermelli, S., Uptrety, N., Barton, M.C., Beretta, L. (2016) MicroRNA-194 regulates hepatocytic differentiation of progenitor cells by targeting YAP1. Stem Cells. 34, 1284-1296, doi: 10.1002/stem.2283

Complete List of Published Work in MyBibiography